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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8662132_8664532_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8662132 - 8664532
Intron Length:
2401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACG
5'SS Class:
strong_major
3'SS Sequence:
CTACCCAGGACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTTTCTGCACCT
Flanking Amino Acid:
AMTTVSESPESRRVPGCLER
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.4
40.3
Major BPS
79
0.72
1
69
38.9
Major PPT
55.1
0.12
1.1
50.1
37.8
Minor 5ss
34.3
-1.8
2.8
40.4
45.5
Minor BPS
45.7
-0.2
2.4
71.32
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020848
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046236
8662002 - 8665598
3597