Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8684395_8685690_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8684395 - 8685690

Intron Length:

1296

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCAGC

5'SS Class:

strong_major

3'SS Sequence:

CCTTGCTCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTACAT

U12 Branch Point Sequence:

TTTTGTTCTACT

Flanking Amino Acid:

LPLQDVYKIGGIGTVPVGRV

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

72.2

39.5

Major BPS

0.37

1.3

Major PPT

74.7

0.56

0.8

32.2

Minor 5ss

34.3

-1.8

2.9

44.2

Minor BPS

49.9

0.07

2.3

80.12

Associated Gene:

Gene:

EEF1A2

Ensembl Gene ID:

ENSAPLG00000008691

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009057

8674472 - 8687752

13281

ENSAPLT00000024254

8675238 - 8745022

69785