Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8687489_8744911_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

8687489 - 8744911

Intron Length:

57423

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTCACCAAG

5'SS Class:

weak_major

3'SS Sequence:

TGGAAATGGAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGGAAAT

U12 Branch Point Sequence:

AGCACGTTTACT

Flanking Amino Acid:

VEKKSGGAGKGPKAKALLYS

Intron Amino Acid Position:

451

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

50.9

0.02

1.4

53.5

45.5

Major BPS

0.05

1.3

44.6

Major PPT

45.1

-0.2

1.2

37.3

43.3

Minor 5ss

41.4

-1

2.7

49.3

Minor BPS

-0.2

2.3

63.95

45.7

Associated Gene:

Gene:

EEF1A2

Ensembl Gene ID:

ENSAPLG00000008691

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024254

8675238 - 8745022

69785