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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8699266_8718632_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8699266 - 8718632
Intron Length:
19367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTAAG
5'SS Class:
major
3'SS Sequence:
TTGTGTTCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTATTATTT
Flanking Amino Acid:
RGWAFIYHAYVFLLVFSCLV
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
67
40
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.5
0.64
0.9
73.9
36.8
Minor 5ss
31.6
-2.1
2.7
34.2
41.4
Minor BPS
55.6
0.26
1.8
76.22
41

Associated Gene:

Gene:
KCNQ2
Ensembl Gene ID:
ENSAPLG00000008262
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029887
8698802 - 8758638
59837
ENSAPLT00000028121
8698802 - 8758638
59837
ENSAPLT00000046657
8698802 - 8758638
59837
ENSAPLT00000008610
8698802 - 8758638
59837
ENSAPLT00000037225
8698802 - 8758638
59837
ENSAPLT00000033348
8698802 - 8758638
59837