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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8718724_8719076_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8718724 - 8719076
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
TTTTCCCCACAG
Flanking Amino Acid:
NSSEGALYILEIVTIVVFGV
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
71.5
41.1
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
79.5
0.66
0.8
73.3
31.8
Minor 5ss
39.7
-1.2
2.8
46.4
44.2
Minor BPS
45.8
-0.4
2.2
62
45.2

Associated Gene:

Gene:
KCNQ2
Ensembl Gene ID:
ENSAPLG00000008262
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008610
8698802 - 8758638
59837
ENSAPLT00000037225
8698802 - 8758638
59837
ENSAPLT00000033348
8698802 - 8758638
59837
ENSAPLT00000029887
8698802 - 8758638
59837
ENSAPLT00000028121
8698802 - 8758638
59837
ENSAPLT00000046657
8698802 - 8758638
59837