About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8719204_8719924_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8719204 - 8719924
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCCCT
5'SS Class:
major
3'SS Sequence:
TCTCTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCGAT
U12 Branch Point Sequence:
ACTTCTTCAGCT
Flanking Amino Acid:
KFARKPFCVIDIMVLIASIA
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
66.6
44.7
Major BPS
73.7
0.59
1.3
72.5
43.5
Major PPT
86
0.81
0.7
80.9
24.2
Minor 5ss
41
-1
3.1
58.9
45.1
Minor BPS
56.5
0.28
1.8
74.49
42.5

Associated Gene:

Gene:
KCNQ2
Ensembl Gene ID:
ENSAPLG00000008262
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029887
8698802 - 8758638
59837
ENSAPLT00000028121
8698802 - 8758638
59837
ENSAPLT00000046657
8698802 - 8758638
59837
ENSAPLT00000008610
8698802 - 8758638
59837
ENSAPLT00000037225
8698802 - 8758638
59837
ENSAPLT00000033348
8698802 - 8758638
59837