Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8721203_8723262_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8721203 - 8723262

Intron Length:

2060

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTTCCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAAGAT

U12 Branch Point Sequence:

ATCTGTGTGACT

Flanking Amino Acid:

TYADALWWGLITLTTIGYGD

Intron Amino Acid Position:

329

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

88.8

Major BPS

59.6

0.24

1.1

55.4

40.4

Major PPT

80.1

0.68

0.7

72.7

32.1

Minor 5ss

37.5

-1.4

2.8

48.3

41.8

Minor BPS

-0.2

2.4

68.41

43.3

Associated Gene:

Gene:

KCNQ2

Ensembl Gene ID:

ENSAPLG00000008262

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028121

8698802 - 8758638

59837

ENSAPLT00000046657

8698802 - 8758638

59837

ENSAPLT00000008610

8698802 - 8758638

59837

ENSAPLT00000037225

8698802 - 8758638

59837

ENSAPLT00000033348

8698802 - 8758638

59837

ENSAPLT00000029887

8698802 - 8758638

59837