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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8723374_8723976_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8723374 - 8723976
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
TCCTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GCTTCACTAACT
Flanking Amino Acid:
IGVSFFALPAGILGSGFALK
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.3
65.3
42.2
Major BPS
100
1.24
0.5
100
0
Major PPT
82.8
0.74
0.7
76.2
32.4
Minor 5ss
31.5
-2.1
2.7
37.9
40
Minor BPS
58.9
0.36
2
79.08
42.4

Associated Gene:

Gene:
KCNQ2
Ensembl Gene ID:
ENSAPLG00000008262
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029887
8698802 - 8758638
59837
ENSAPLT00000028121
8698802 - 8758638
59837
ENSAPLT00000046657
8698802 - 8758638
59837
ENSAPLT00000008610
8698802 - 8758638
59837
ENSAPLT00000037225
8698802 - 8758638
59837
ENSAPLT00000033348
8698802 - 8758638
59837