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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8732439_8734704_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8732439 - 8734704
Intron Length:
2266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCAGC
5'SS Class:
major
3'SS Sequence:
CTTCTGTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TTCTGTTTAAAG
Flanking Amino Acid:
NLKSKSGLTFRKEQQPEPSP
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
68.3
42.9
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
73.7
0.53
1
73.8
34.6
Minor 5ss
36.1
-1.6
2.7
44.3
43.1
Minor BPS
55.7
0.04
2
63.96
44.2

Associated Gene:

Gene:
KCNQ2
Ensembl Gene ID:
ENSAPLG00000008262
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029887
8698802 - 8758638
59837
ENSAPLT00000008610
8698802 - 8758638
59837
ENSAPLT00000046657
8698802 - 8758638
59837
ENSAPLT00000037225
8698802 - 8758638
59837