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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8732439_8740072_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8732439 - 8740072
Intron Length:
7634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCAGC
5'SS Class:
major
3'SS Sequence:
CCCTCATTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TAATTTTTACTC
Flanking Amino Acid:
NLKSKSGLTFSKSKPCRESL
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
68.3
42.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77.8
0.63
0.8
68.6
36.2
Minor 5ss
36.1
-1.6
2.7
44.3
43.1
Minor BPS
56.1
0.17
1.5
63.37
36.6

Associated Gene:

Gene:
KCNQ2
Ensembl Gene ID:
ENSAPLG00000008262
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028121
8698802 - 8758638
59837