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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8747996_8748511_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8747996 - 8748511
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
AGGGACTTGATT
Flanking Amino Acid:
PGLKVSIRAVCIMRFLVSKR
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
67.8
37.5
Major BPS
75
0.62
1
65.3
41.5
Major PPT
78.6
0.64
0.7
72.5
25.7
Minor 5ss
29.9
-2.3
3.3
35.1
42.4
Minor BPS
49.4
0.04
1.6
62.66
41.7

Associated Gene:

Gene:
KCNQ2
Ensembl Gene ID:
ENSAPLG00000008262
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028121
8698802 - 8758638
59837
ENSAPLT00000046657
8698802 - 8758638
59837
ENSAPLT00000008610
8698802 - 8758638
59837
ENSAPLT00000037225
8698802 - 8758638
59837
ENSAPLT00000033348
8698802 - 8758638
59837
ENSAPLT00000029887
8698802 - 8758638
59837