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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8814655_8814745_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8814655 - 8814745
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
AGGTTTGTAACC
Flanking Amino Acid:
MMTTNVWVKQEWHDYKLRWD
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
78.5
0.64
1
76.3
37.7
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
49.5
-0
2
60.44
39.3

Associated Gene:

Gene:
CHRNA4
Ensembl Gene ID:
ENSAPLG00000007776
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008077
8809521 - 8829393
19873