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Intron Name: Anas_platyrhynchos_platyrhynchos_21_8814856_8822434_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8814856 - 8822434

Intron Length:

7579

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCTCCCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGACAA

U12 Branch Point Sequence:

ACAACTGTAGTC

Flanking Amino Acid:

IWRPDIVLYNNADGDFAVTH

Intron Amino Acid Position:

123

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

35.2

Major BPS

45.4

-0.2

1.1

48.3

35.3

Major PPT

80.6

0.69

0.7

31.9

Minor 5ss

32.6

-2

3.3

40.4

Minor BPS

41.1

-0.7

45.75

37.3

Associated Gene:

Gene:

CHRNA4

Ensembl Gene ID:

ENSAPLG00000007776

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008077

8809521 - 8829393

19873