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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8836860_8837629_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8836860 - 8837629
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTGGAT
U12 Branch Point Sequence:
TATGGCTTACTG
Flanking Amino Acid:
EGIQGPRGRTGPPGEVVLGK
Intron Amino Acid Position:
1344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
49
-0
1.5
48.8
46.3
Major PPT
82.2
0.73
0.7
81.1
24.1
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
47
-0.3
2.1
55.78
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007141
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007496
8836190 - 8876046
39857