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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8837708_8838595_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8837708 - 8838595
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGACG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATGATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATGATT
Flanking Amino Acid:
PGKDGYPGERGAPGPKGEKG
Intron Amino Acid Position:
1318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.7
41.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
70.4
0.46
1
71.4
38.5
Minor 5ss
38.7
-1.3
3
49
47
Minor BPS
68.7
0.67
1.5
87.78
31

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007141
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007496
8836190 - 8876046
39857