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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8838785_8839361_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8838785 - 8839361
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
CTTGCTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CAAACTTTCATT
Flanking Amino Acid:
VTQACERMIQTHVLKFDSFI
Intron Amino Acid Position:
1255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
76.9
33.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
82
0.72
0.8
80.1
31.9
Minor 5ss
35.1
-1.7
2.8
38.8
40.3
Minor BPS
48.6
-0
1.8
62.24
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007141
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007496
8836190 - 8876046
39857