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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8840802_8841332_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8840802 - 8841332
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
GCTTTCCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGACAT
U12 Branch Point Sequence:
TCTTCCTAGACA
Flanking Amino Acid:
KGPPGDVGPTGLPGPKGERG
Intron Amino Acid Position:
1221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
59.8
0.24
1.2
67
39.8
Major PPT
79.1
0.66
0.8
73.7
31.3
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
69.5
0.61
1.7
78.22
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007141
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007496
8836190 - 8876046
39857