About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8843549_8845759_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8843549 - 8845759
Intron Length:
2211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TCTTTGGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTTCTTTGATT
Flanking Amino Acid:
PGLPGPPGPPGEPGPPGKVG
Intron Amino Acid Position:
1135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71
35.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.8
0.58
0.9
73.6
37
Minor 5ss
43.4
-0.7
2.8
60.6
43.7
Minor BPS
76.9
0.93
1.1
86.34
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007141
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007496
8836190 - 8876046
39857