About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8845847_8846482_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8845847 - 8846482
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCACAT
U12 Branch Point Sequence:
CTCACATCACCT
Flanking Amino Acid:
EDRCCDLPALRDEETCPTSA
Intron Amino Acid Position:
1106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
69.6
36.5
Major BPS
65.3
0.38
1.1
72.6
33.1
Major PPT
90.7
0.92
0.6
88.8
20.5
Minor 5ss
31.4
-2.1
3.1
36.2
41.7
Minor BPS
44.2
-0.3
2.1
61.97
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007141
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037361
8845088 - 8876160
31073
ENSAPLT00000007496
8836190 - 8876046
39857
ENSAPLT00000038376
8845088 - 8873908
28821