Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8846561_8848543_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8846561 - 8848543

Intron Length:

1983

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTCCC

5'SS Class:

strong_major

3'SS Sequence:

TTCTCCCCCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAC

U12 Branch Point Sequence:

TTCTTGTCACCT

Flanking Amino Acid:

TRGPRSGSASFQLQSLQIAC

Intron Amino Acid Position:

1080

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

66.2

39.6

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

0.63

0.7

69.8

Minor 5ss

30.5

-2.2

2.8

37.9

39.5

Minor BPS

45.8

-0.2

2.4

71.07

46.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007141

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038376

8845088 - 8873908

28821

ENSAPLT00000037361

8845088 - 8876160

31073

ENSAPLT00000007496

8836190 - 8876046

39857