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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8848703_8849510_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8848703 - 8849510
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCCTTATC
5'SS Class:
major
3'SS Sequence:
TCTTTCCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
CGTTGCTGAAGT
Flanking Amino Acid:
KKIFYGSFHKVHVAVSRFKI
Intron Amino Acid Position:
1027

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.4
69.2
41.7
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
77.3
0.61
0.8
70.1
35.5
Minor 5ss
34.7
-1.7
2.9
46.5
41.7
Minor BPS
48.4
-0
2.2
69.32
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007141
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007496
8836190 - 8876046
39857
ENSAPLT00000038376
8845088 - 8873908
28821
ENSAPLT00000037361
8845088 - 8876160
31073