Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8849621_8850027_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8849621 - 8850027

Intron Length:

407

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACC|GTAAGGTTT

5'SS Class:

major

3'SS Sequence:

TTTTTCCCTGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

AAGTTCTTATTT

Flanking Amino Acid:

FQPLLGVNLDPSKKSLTYFN

Intron Amino Acid Position:

990

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.8

0.4

1.3

70.8

41.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.4

0.82

0.6

82.4

22.2

Minor 5ss

44.5

-0.6

3.4

41.9

Minor BPS

59.5

0.38

1.6

70.87

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007141

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038376

8845088 - 8873908

28821

ENSAPLT00000037361

8845088 - 8876160

31073

ENSAPLT00000007496

8836190 - 8876046

39857