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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8853706_8856567_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8853706 - 8856567
Intron Length:
2862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTCCTCTAATT
Flanking Amino Acid:
IRGFVPSKTEACPTISSAAG
Intron Amino Acid Position:
883

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
67.4
0.63
1.6
86.17
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007141
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038376
8845088 - 8873908
28821
ENSAPLT00000037361
8845088 - 8876160
31073
ENSAPLT00000007496
8836190 - 8876046
39857