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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8856625_8856912_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8856625 - 8856912
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTCACGTGTACG
Flanking Amino Acid:
SESTSATGRTAPVISKLPSI
Intron Amino Acid Position:
864

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
90.4
0.91
0.6
88.5
21
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
42.1
-0.7
2.5
53.03
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007141
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038376
8845088 - 8873908
28821
ENSAPLT00000037361
8845088 - 8876160
31073
ENSAPLT00000007496
8836190 - 8876046
39857