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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8867619_8868633_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8867619 - 8868633
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
GCTCCGCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
CTGTGCTCAGGG
Flanking Amino Acid:
KNMGIEIFAIGVKNADEAEL
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
34.4
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
68.5
0.42
0.9
61
35.1
Minor 5ss
38.7
-1.3
3
49.7
46.1
Minor BPS
38.7
-0.9
2.3
42.86
48.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007141
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038376
8845088 - 8873908
28821
ENSAPLT00000037361
8845088 - 8876160
31073
ENSAPLT00000007496
8836190 - 8876046
39857