About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8868799_8868937_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8868799 - 8868937
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCCA
5'SS Class:
major
3'SS Sequence:
TTCTCCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
GGCACCCCATCC
Flanking Amino Acid:
LRYKGGNTFTGLALTHVLEQ
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
62.5
43.9
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
80.7
0.69
0.7
73.2
31.7
Minor 5ss
43.7
-0.7
2.9
57.8
46.4
Minor BPS
40.1
-0.7
2
46.15
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007141
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038376
8845088 - 8873908
28821
ENSAPLT00000037361
8845088 - 8876160
31073
ENSAPLT00000007496
8836190 - 8876046
39857