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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8869058_8869719_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8869058 - 8869719
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGACAC
5'SS Class:
major
3'SS Sequence:
TTTCCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TCTTGCATGATG
Flanking Amino Acid:
FSIAQDKIRVGLSQYSSDPR
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
66
40.1
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
84
0.76
0.7
77
31.7
Minor 5ss
30.9
-2.2
3.3
41.2
45.5
Minor BPS
47.9
-0.3
2.1
59.01
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007141
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038376
8845088 - 8873908
28821
ENSAPLT00000037361
8845088 - 8876160
31073
ENSAPLT00000007496
8836190 - 8876046
39857