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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8885906_8886275_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8885906 - 8886275
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAACTGTG
5'SS Class:
major
3'SS Sequence:
TGCCTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TAATTATTATCT
Flanking Amino Acid:
PDPGNTSFLSVQPNKEIKIV
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.2
68.8
42.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
85.7
0.8
0.8
83.8
31.2
Minor 5ss
42
-0.9
3.2
54.6
45
Minor BPS
55.7
0.26
1.9
75.18
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006994
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039996
8882101 - 8891076
8976
ENSAPLT00000032228
8882252 - 8891076
8825
ENSAPLT00000007265
8882101 - 8897568
15468