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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8886462_8887062_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8886462 - 8887062
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCGAG
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TCCTCCTTCATT
Flanking Amino Acid:
ALLEHGIIQHVSNRHHFFDG
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
59.7
41.3
Major BPS
75
0.62
1.1
77.2
36
Major PPT
92.4
0.95
0.6
85.4
29.3
Minor 5ss
30.7
-2.2
3.3
38.1
46.8
Minor BPS
66.7
0.61
1.8
79.08
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006994
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039996
8882101 - 8891076
8976
ENSAPLT00000032228
8882252 - 8891076
8825
ENSAPLT00000007265
8882101 - 8897568
15468