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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8890904_8897482_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8890904 - 8897482
Intron Length:
6579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGC
5'SS Class:
major
3'SS Sequence:
TCTTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTCAG
U12 Branch Point Sequence:
CTGGCCTCAGCG
Flanking Amino Acid:
AEVMIAGEQLRLRLHDGKLI
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
65.2
40.3
Major BPS
46.3
-0.2
1.6
53.3
44.2
Major PPT
84.1
0.77
0.7
77
31.7
Minor 5ss
29.4
-2.4
3.5
41.3
45.4
Minor BPS
46.4
-0.4
2
51.2
48.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006994
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007265
8882101 - 8897568
15468