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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_889139_892496_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
889139 - 892496
Intron Length:
3358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTATA
5'SS Class:
major
3'SS Sequence:
GTTTCATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AAATCATGAAAG
Flanking Amino Acid:
KSVRRGSSAEMAGLQIGRKI
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.1
34.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
83.7
0.76
0.8
77.6
35.6
Minor 5ss
38.3
-1.3
3
51.6
44.9
Minor BPS
47.2
-0.3
1.8
52.35
40.8

Associated Gene:

Gene:
PREX1
Ensembl Gene ID:
ENSAPLG00000010034
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046636
744231 - 918369
174139
ENSAPLT00000027144
744231 - 918369
174139
ENSAPLT00000010521
815464 - 918244
102781