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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8908037_8909626_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8908037 - 8909626
Intron Length:
1590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGGGATAA
5'SS Class:
major
3'SS Sequence:
TTCCTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
GTTACCTCAAAT
Flanking Amino Acid:
ATKKASSADDGGFQSYGNTR
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
60.9
36.3
Major BPS
68
0.45
1
57.8
39
Major PPT
84.3
0.77
0.8
79.1
32.9
Minor 5ss
30
-2.3
3.2
28.8
43.6
Minor BPS
62.5
0.47
1.7
79.94
41

Associated Gene:

Gene:
ARFGAP1
Ensembl Gene ID:
ENSAPLG00000006416
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031804
8907979 - 8927865
19887