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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8909960_8910404_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8909960 - 8910404
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCCT
5'SS Class:
major
3'SS Sequence:
CTGCCAATAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCCAAT
U12 Branch Point Sequence:
CTGCCAATAAAA
Flanking Amino Acid:
FSGKPDDHSERPAEGDSYQN
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
69.9
40.2
Major BPS
56.7
0.17
1.4
64.7
41
Major PPT
50.4
0.01
1.1
50.1
36.1
Minor 5ss
43
-0.8
2.8
60.4
43.9
Minor BPS
45.3
-0.3
1.9
56.63
41.8

Associated Gene:

Gene:
ARFGAP1
Ensembl Gene ID:
ENSAPLG00000006416
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029120
8909162 - 8927865
18704
ENSAPLT00000006674
8909605 - 8927865
18261
ENSAPLT00000032803
8909162 - 8927865
18704
ENSAPLT00000031804
8907979 - 8927865
19887