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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8910482_8911648_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8910482 - 8911648
Intron Length:
1167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAGAT
U12 Branch Point Sequence:
TCCAGATGAAAA
Flanking Amino Acid:
SVGVSQLASKVQGVGSKGWR
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.4
37.3
Major BPS
61.5
0.29
1.1
56.9
40.5
Major PPT
81.2
0.7
0.7
73.9
31.2
Minor 5ss
38.9
-1.2
2.8
49.3
46.5
Minor BPS
39.7
-0.7
2
47.4
42.1

Associated Gene:

Gene:
ARFGAP1
Ensembl Gene ID:
ENSAPLG00000006416
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031804
8907979 - 8927865
19887
ENSAPLT00000029120
8909162 - 8927865
18704
ENSAPLT00000032803
8909162 - 8927865
18704