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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8913784_8916971_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8913784 - 8916971
Intron Length:
3188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTATA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAA
U12 Branch Point Sequence:
TTGCTTTTAAAT
Flanking Amino Acid:
TRFGSQASQKASELGQTLNE
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
85.1
25.9
Major BPS
74.9
0.62
1
67.3
39.2
Major PPT
68.7
0.42
1
66.3
38.7
Minor 5ss
33.9
-1.8
2.8
42.4
44.3
Minor BPS
65.2
0.56
1.4
78.07
38.3

Associated Gene:

Gene:
ARFGAP1
Ensembl Gene ID:
ENSAPLG00000006416
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032803
8909162 - 8927865
18704