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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8917005_8917339_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8917005 - 8917339
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCATTTTAAAA
Flanking Amino Acid:
SKIASAAKEGATRFGSQASQ
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
76.2
34.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90.8
0.92
0.6
87.1
23.5
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
61.3
0.35
1.4
68.54
37.9

Associated Gene:

Gene:
ARFGAP1
Ensembl Gene ID:
ENSAPLG00000006416
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032803
8909162 - 8927865
18704
ENSAPLT00000031804
8907979 - 8927865
19887
ENSAPLT00000029120
8909162 - 8927865
18704
ENSAPLT00000006674
8909605 - 8927865
18261