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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8917397_8919805_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8917397 - 8919805
Intron Length:
2409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGGAAG
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTCTTTTAAAG
Flanking Amino Acid:
LNNAMSSLYSGWSSFTTGAS
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
62.9
43
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
80.4
0.68
1
81.8
27.5
Minor 5ss
34.5
-1.8
3.3
49.5
46.5
Minor BPS
65.1
0.33
1.4
69.62
37.6

Associated Gene:

Gene:
ARFGAP1
Ensembl Gene ID:
ENSAPLG00000006416
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029120
8909162 - 8927865
18704
ENSAPLT00000006674
8909605 - 8927865
18261
ENSAPLT00000032803
8909162 - 8927865
18704
ENSAPLT00000031804
8907979 - 8927865
19887