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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8920694_8921476_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8920694 - 8921476
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTCTTTTAAAT
Flanking Amino Acid:
QPKTSLSSTHRSSAGQPQNV
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
83.9
34.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.1
0.77
0.8
81.4
34.9
Minor 5ss
48.2
-0.2
2.5
69.3
41.2
Minor BPS
67.5
0.63
1.3
80.79
34.3

Associated Gene:

Gene:
ARFGAP1
Ensembl Gene ID:
ENSAPLG00000006416
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032803
8909162 - 8927865
18704
ENSAPLT00000031804
8907979 - 8927865
19887
ENSAPLT00000029120
8909162 - 8927865
18704
ENSAPLT00000006674
8909605 - 8927865
18261