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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8922404_8923729_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8922404 - 8923729
Intron Length:
1326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCCGT
5'SS Class:
major
3'SS Sequence:
AACTGATTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
GKHRGLGVHLSFVRSVTMDK
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.3
63.6
48.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
70.6
0.46
1
62.5
42.5
Minor 5ss
35
-1.7
3.1
48.6
46.9
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
ARFGAP1
Ensembl Gene ID:
ENSAPLG00000006416
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031804
8907979 - 8927865
19887
ENSAPLT00000029120
8909162 - 8927865
18704
ENSAPLT00000006674
8909605 - 8927865
18261
ENSAPLT00000032803
8909162 - 8927865
18704