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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8923840_8924738_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8923840 - 8924738
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGAAAA
5'SS Class:
major
3'SS Sequence:
TTTCCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
ATGACTTTATTT
Flanking Amino Acid:
KEVRAQDENNVCFECGAFNP
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
75.1
29.1
Major BPS
75.1
0.62
1
65.6
41
Major PPT
89.4
0.89
0.6
84
24.1
Minor 5ss
29.8
-2.3
2.9
36
40.8
Minor BPS
56.3
0.28
1.6
70.65
41

Associated Gene:

Gene:
ARFGAP1
Ensembl Gene ID:
ENSAPLG00000006416
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006674
8909605 - 8927865
18261
ENSAPLT00000032803
8909162 - 8927865
18704
ENSAPLT00000031804
8907979 - 8927865
19887
ENSAPLT00000029120
8909162 - 8927865
18704