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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8961003_8961496_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8961003 - 8961496
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TATTGCTTCTCT
Flanking Amino Acid:
IQYRPRYIVVYAIWTAVWVT
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.8
83.2
28.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
78.8
0.65
0.8
70.5
36.2
Minor 5ss
36.2
-1.6
2.7
42.6
38.5
Minor BPS
41.5
-0.5
3.7
76.85
45.5

Associated Gene:

Gene:
NKAIN4
Ensembl Gene ID:
ENSAPLG00000006143
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021320
8937299 - 8984788
47490
ENSAPLT00000006384
8937299 - 8983024
45726
ENSAPLT00000045784
8937299 - 8983490
46192