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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8961578_8969049_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8961578 - 8969049
Intron Length:
7472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
CTCTTTGCAACT
Flanking Amino Acid:
FYLEVGGLSKDSELLTFNIS
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
77.8
0.63
0.7
77
25.1
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
46.6
-0.1
2.2
66.64
44.9

Associated Gene:

Gene:
NKAIN4
Ensembl Gene ID:
ENSAPLG00000006143
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021320
8937299 - 8984788
47490
ENSAPLT00000006384
8937299 - 8983024
45726
ENSAPLT00000045784
8937299 - 8983490
46192