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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8969248_8975239_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8969248 - 8975239
Intron Length:
5992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TGATGCTGAAAT
Flanking Amino Acid:
MHSSFQILIALVGFVYACYV
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
71.8
39.7
Major BPS
68
0.45
1
57.8
39
Major PPT
84
0.77
0.8
75.9
38
Minor 5ss
31.1
-2.2
2.6
35.7
40.4
Minor BPS
51.3
0.12
2
72.39
43.5

Associated Gene:

Gene:
NKAIN4
Ensembl Gene ID:
ENSAPLG00000006143
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021320
8937299 - 8984788
47490
ENSAPLT00000006384
8937299 - 8983024
45726
ENSAPLT00000045784
8937299 - 8983490
46192