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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_897567_898351_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
897567 - 898351
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTGAC
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TCTCGTATAATT
Flanking Amino Acid:
PKGCFSLTAKILEAFAAEDS
Intron Amino Acid Position:
846

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
66.9
39.2
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
89
0.88
0.6
89
20.3
Minor 5ss
37.5
-1.4
3.4
52.1
45.1
Minor BPS
48.4
-0
2
69.75
41.8

Associated Gene:

Gene:
PREX1
Ensembl Gene ID:
ENSAPLG00000010034
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046636
744231 - 918369
174139
ENSAPLT00000027144
744231 - 918369
174139
ENSAPLT00000010521
815464 - 918244
102781