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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_898514_899069_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
898514 - 899069
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAACCC
5'SS Class:
major
3'SS Sequence:
TTATCTCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
CTTGCTTTATCT
Flanking Amino Acid:
ISRRLANYQEFADGLKTKVS
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
56.9
40.7
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
81
0.7
0.8
73.5
36.7
Minor 5ss
31.5
-2.1
3.3
43.4
43.7
Minor BPS
62.8
0.48
1.7
79.06
43.7

Associated Gene:

Gene:
PREX1
Ensembl Gene ID:
ENSAPLG00000010034
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010521
815464 - 918244
102781
ENSAPLT00000046636
744231 - 918369
174139
ENSAPLT00000027144
744231 - 918369
174139