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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8988188_8989086_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8988188 - 8989086
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCCTG
5'SS Class:
major
3'SS Sequence:
CCTGGTTATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AGCATTTTAATG
Flanking Amino Acid:
WEENSVEESRDAETSRSREE
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.3
46
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71.2
0.48
1
64.3
40.7
Minor 5ss
47.6
-0.2
2.8
64.4
47
Minor BPS
52
-0
1.4
50.27
38.5

Associated Gene:

Gene:
BIRC7
Ensembl Gene ID:
ENSAPLG00000006107
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018569
8987130 - 8994470
7341