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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8990306_8990402_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8990306 - 8990402
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTCAT
5'SS Class:
major
3'SS Sequence:
GTGATGTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TCTTCTGTGACC
Flanking Amino Acid:
QESFASSRPPGHSRDQTEQD
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
68.1
38.6
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
73.7
0.53
1
69.3
45.9
Minor 5ss
32.6
-2
3
46.8
42.6
Minor BPS
58.9
0.26
2
73.02
38.9

Associated Gene:

Gene:
BIRC7
Ensembl Gene ID:
ENSAPLG00000006107
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047160
8990114 - 8994470
4357
ENSAPLT00000018569
8987130 - 8994470
7341
ENSAPLT00000006327
8987339 - 8994470
7132