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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8990482_8991083_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8990482 - 8991083
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATGTATTTAAAA
Flanking Amino Acid:
PWREHARWNPRCEFLLGSRG
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1.1
69.7
43.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
86.2
0.82
0.8
80.1
32
Minor 5ss
45.1
-0.5
2.6
58.7
45.8
Minor BPS
59.5
0.3
1.6
68.04
38

Associated Gene:

Gene:
BIRC7
Ensembl Gene ID:
ENSAPLG00000006107
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018569
8987130 - 8994470
7341
ENSAPLT00000006327
8987339 - 8994470
7132
ENSAPLT00000047375
8810311 - 8994470
184160
ENSAPLT00000047160
8990114 - 8994470
4357