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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_899281_900466_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
899281 - 900466
Intron Length:
1186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTAATGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GACCCTTTAATG
Flanking Amino Acid:
PSIIGLDPEQVGTINPVSYT
Intron Amino Acid Position:
970

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
82.5
29.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
72.2
0.5
1
70.3
40
Minor 5ss
34
-1.8
3.1
49.1
46.7
Minor BPS
58.4
0.12
1.4
54.58
40.8

Associated Gene:

Gene:
PREX1
Ensembl Gene ID:
ENSAPLG00000010034
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046636
744231 - 918369
174139
ENSAPLT00000027144
744231 - 918369
174139
ENSAPLT00000010521
815464 - 918244
102781