About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_8994375_8994455_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8994375 - 8994455
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAGGACAA
5'SS Class:
major
3'SS Sequence:
CATTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATTATCTCATTC
Flanking Amino Acid:
MSRGDNEGMADTVPA
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
60.8
39.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
84.1
0.77
0.8
81.1
30.5
Minor 5ss
32.3
-2
3.4
42.8
44.5
Minor BPS
48.3
-0.1
1.8
61.4
38.1

Associated Gene:

Gene:
BIRC7
Ensembl Gene ID:
ENSAPLG00000006107
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047160
8990114 - 8994470
4357